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Multiple sequence alignment
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#	Item
41	© 2004 Nature Publishing Group http://www.nature.com/naturebiotechnology _computational BIOLOGY PRIMER Add to Reading List Source URL: bioinfo.ict.ac.cn Language: English - Date: 2014-11-28 11:09:46 Bioinformatics Computational phylogenetics BLOSUM Sequence alignment BLAST FASTA Homology Position weight matrix Matrix Substitution matrix Multiple sequence alignment
42	Finding DNA Regulatory Motifs with Positiondependent Models HuihaiWu University of Surrey, Guildford, United Kingdom Email: Prudence W.H. Wong, Mark X. Caddick and Chris Sibthorp Add to Reading List Source URL: cgi.csc.liv.ac.uk Language: English - Date: 2013-07-03 10:32:55 Bioinformatics Position weight matrix Sequence motif Multiple sequence alignment DNA binding site Gibbs sampling Bayesian network Sequence alignment
43	How to Compute a Large Tree (with or without an alignment) This talk •  Part 1: How to get a good alignment •  Part 2: How to get a good tree from a good Add to Reading List Source URL: tandy.cs.illinois.edu Language: English - Date: 2016-08-02 03:01:56 Computational phylogenetics Bioinformatics Sequence alignment Multiple sequence alignment MUSCLE Alignment Clustal Transcriptome
44	Implementing phylogenetic workflows for comparative genomics using BioPerl Jason E Stajich Dept of Plant and Microbial Biology University of California Berkeley, CA Add to Reading List Source URL: informatics.nescent.org Language: English - Date: 2016-04-13 13:52:31 Computational phylogenetics Bioinformatics Phylogenetics Multiple sequence alignment Sequence alignment Phylogenetic tree Homology Comparative genomics Nucleic acid sequence Molecular phylogenetics Clustal T-Coffee
45	WSEAS TRANSACTIONS on BIOLOGY and BIOMEDICINE S.M. Yiu P.Y. Chan T.W. Lam W.K. Sung H.F. Ting P.W.H. Wong Allowing Mismatches in Anchors for Whole Genome Alignment Add to Reading List Source URL: www.wseas.us Language: English - Date: 2008-03-13 05:22:34 Bioinformatics Computational phylogenetics Nucleic acids Suffix tree Evolutionary biology Molecular biology MUMmer Multiple sequence alignment Sequence alignment Conserved sequence Nucleic acid sequence Homology
46	Journal of Computer and System Sciences – 363 www.elsevier.com/locate/jcss Designing seeds for similarity search in genomic DNA Jeremy Buhlera,∗ , Uri Keichb , Yanni Suna a Department of Computer Scienc Add to Reading List Source URL: www.maths.usyd.edu.au Language: English - Date: 2005-12-15 13:57:59 Computational phylogenetics Bioinformatics Markov models Sequence alignment BLAST Markov chain Finite-state machine String searching algorithm Dynamic programming Multiple sequence alignment
47	Vol. 19 Suppl, pages i54–i62 DOI: bioinformatics/btg1005 BIOINFORMATICS Glocal alignment: finding rearrangements during Add to Reading List Source URL: lagan.stanford.edu Language: English - Date: 2003-09-07 19:25:26 Computational phylogenetics Bioinformatics Genomics Genetic mapping Genetics BLAST Sequence alignment Multiple sequence alignment Gap penalty BLAT Comparative genomics Human genome
48	Pacific Symposium on Biocomputing 13:October 2, :11 Add to Reading List Source URL: psb.stanford.edu Language: English - Date: 2015-08-18 15:12:16 Computational phylogenetics Bioinformatics Multiple sequence alignment Clustal ProbCons MUSCLE Sequence alignment MAFFT Tree alignment NeedlemanWunsch algorithm Gap penalty Phylogenetic tree
49	Learning Parameter Sets for Alignment Advising Dan DeBlasio John Kececioglu Department of Computer Science University of Arizona Add to Reading List Source URL: www.cs.arizona.edu Language: English - Date: 2015-03-06 18:58:58 Estimation theory Computational phylogenetics Bioinformatics Statistical theory Statistical inference Estimator Sequence alignment Multiple sequence alignment Parameter
50	Vol. 22 no, pages e393–e401 doi:bioinformatics/btl245 BIOINFORMATICS Apples to apples: improving the performance of motif finders Add to Reading List Source URL: www.maths.usyd.edu.au Language: English - Date: 2006-08-02 16:36:22 Bioinformatics Multiple sequence alignment DNA binding site Entropy Motif Phylo Multiple EM for Motif Elicitation

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